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Fragment.h

#ifndef FRAGMENT_H
#define FRAGMENT_H

#include <iosfwd>
#include <string>
#include <vector>

class Fragment
{
  friend std::ostream& operator<<( std::ostream& p_Out, const Fragment& p_Fragment );
  
 public:
  Fragment( void );

  virtual ~Fragment(){};
  
  void initialise( void );

  inline void incrementOccurenceCount( void );

  inline void decreaseOccurenceCount( void );

  inline void resetOccurenceCount( void );

  inline int getFragmentId( void ) const;

  inline void setFragmentId( int p_id );

  inline std::string getReferenceFragmentId( void ) const;

  inline void setReferenceFragmentId( std::string p_id );

  inline const std::vector<double>& getProperties( void ) const;

  inline unsigned int getNbrProperties( void ) const;
  
  inline void setProperties( std::vector<double>& p_properties );

  inline void addProperty( double p_property ) {m_properties.push_back( p_property );}

  inline std::string getLibraryName( void ) const;

  inline void setLibraryName( std::string p_Name );

  inline unsigned long int  getOccurenceCount( void ) const;

  inline void addGoodness( const float p_goodness );
  
  inline float getGoodness( void ) const;

  inline void resetGoodness( void );

  class CompareFragmentByOccurence
  {
  public:
    int operator()( Fragment* fragment1, Fragment* fragment2 )
    {
      // descending order of good occurence (best first)
      return fragment1->getOccurenceCount() > fragment2->getOccurenceCount();
    }
  };

  class CompareFragmentByGoodness
  {
  public:
    int operator()( Fragment* fragment1, Fragment* fragment2 )
    {
      // descending order of goodness (best first)
      return fragment1->getGoodness() > fragment2->getGoodness();
    }
  };

 protected:
  
 private:
  
  int m_fragment_id;
  std::string m_ReferenceFragmentId;
  unsigned long int m_OccurenceCount;
  float m_Goodness;
  std::string m_LibraryName;
  std::vector<double> m_properties;
  
};

#include "Fragment.inline.cc"

#endif
_OccurenceCount;
  float m_Goodness;
  std::string m_LibraryName;
  std::vector<double> m_properties;
  
};

#include "Fragment.inline.cc"

#endif

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